- Class: 3
- Architecture: 3.30:2-Layer Sandwich
- Topology: 3.30.1550:Ribosomal protein L11, N-terminal domain
- Homology: 3.30.1550.10:Ribosomal protein L11/L12, N-terminal domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1mms | [A](a) | [A](a) | [A](a) | 2.57 | CD:CADMIUM ION MG:MAGNESIUM ION MMC:METHYL MERCURY ION | |||
1wib | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2e34 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2e35 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2e36 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2h8w | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2jq7 | [A][a](a) | [A][a](a) | [A][a](a) | NOTAPPLICABLE. | BB9:(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID DBU:(2Z)-2-AMINOBUT-2-ENOIC ACID DCY:D-CYSTEINE DHA:2-AMINO-ACRYLIC ACID MH6:3-HYDROXY-2-IMINOPROPANOIC ACID NH2:AMINO GROUP QUA:8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID TS9:(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID | |||
2k3f | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
2nxn | [AB] | [AB] | [AB] | 2.4 | ||||
2qa4 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | [A13BCDEFGHIJKLMNOPQ](ab) | 3 | CD:CADMIUM ION CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION NA:SODIUM ION OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE OMU:O2___sq___-METHYLURIDINE 5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE UR3:3-METHYLURIDINE-5___sq___-MONOPHOSHATE | |||
2zjp | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | 3.7 | 3GL:(2S,4S)-2-AMINO-4-HYDROXY-PENTANEDIOIC ACID BB9:(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID DBU:(2Z)-2-AMINOBUT-2-ENOIC ACID DHA:2-AMINO-ACRYLIC ACID MG:MAGNESIUM ION MH6:3-HYDROXY-2-IMINOPROPANOIC ACID NH2:AMINO GROUP NO1:4-(HYDROXYMETHYL)-3-METHYL-1H-INDOLE-2-CARBOXYLIC ACID ZN:ZINC ION | |||
2zjq | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabc](ab) | 3.3 | ||||
3cf5 | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab][a](ab) | 3.3 | BB9:(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID DBU:(2Z)-2-AMINOBUT-2-ENOIC ACID DCY:D-CYSTEINE DHA:2-AMINO-ACRYLIC ACID MG:MAGNESIUM ION MH6:3-HYDROXY-2-IMINOPROPANOIC ACID NH2:AMINO GROUP QUA:8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID TS9:(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID | |||
3cjq | [AB] | [AB] | [AB] | 2.7 | 2MM:N,N-DIMETHYL-L-METHIONINE IOD:IODIDE ION SAH:S-ADENOSYL-L-HOMOCYSTEINE | |||
3cjr | [AB] | [AB] | [AB] | 2.05 | SFG:SINEFUNGIN | |||
3cjs | [AB] | [AB] | [AB] | 1.37 | EDO:1,2-ETHANEDIOL | |||
3cjt | [AB] | [AB] | [AB] | 2.3 | 2MM:N,N-DIMETHYL-L-METHIONINE CL:CHLORIDE ION EDO:1,2-ETHANEDIOL NO3:NITRATE ION SAH:S-ADENOSYL-L-HOMOCYSTEINE SAM:S-ADENOSYLMETHIONINE | |||
3egv | [AB] | [AB] | [AB] | 1.75 | 4MM:N,N,N-TRIMETHYLMETHIONINE CL:CHLORIDE ION GOL:GLYCEROL IOD:IODIDE ION SAH:S-ADENOSYL-L-HOMOCYSTEINE | |||
3j7y | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuv](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuv](ab) | [A2BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstu](ab) | 3.4 | A:ADENOSINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION ZN:ZINC ION | |||
3j7z | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | 3.9 | ERY:ERYTHROMYCIN A | |||
4uy8 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | 3.8 | 5MU:5-METHYLURIDINE 5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION TRP:TRYPTOPHAN ZN:ZINC ION | |||
4v19 | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](a2b) | [A28](a2b) | [A28](a2b) | 3.4 | MG:MAGNESIUM ION P5P:PURINE RIBOSIDE-5___sq___-MONOPHOSPHATE Y5P:1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1,4-DIHYDROPYRIMIDINE ZN:ZINC ION | |||
5col | [A] | [A] | [A] | 2.25 | CIT:CITRIC ACID CL:CHLORIDE ION PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL | |||
5d8h | [AB][a](a) | [AB][a](a) | [AB][a](a) | 2.8 | BB9:(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID DBU:(2Z)-2-AMINOBUT-2-ENOIC ACID DCY:D-CYSTEINE DHA:2-AMINO-ACRYLIC ACID MG:MAGNESIUM ION MH6:3-HYDROXY-2-IMINOPROPANOIC ACID MSE:SELENOMETHIONINE NA:SODIUM ION NH2:AMINO GROUP QUA:8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TS9:(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID | |||
5dar | [AB](a) | [AB](a) | [AB](a) | 2.9 | CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION | |||
5dm6 | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | 2.9 | MG:MAGNESIUM ION | |||
5dm7 | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZab](ab) | 3 | HGR:HYGROMYCIN A MG:MAGNESIUM ION | |||
5gad | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abcd) | 3.7 | GNP:PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER MG:MAGNESIUM ION ZN:ZINC ION | |||
5gag | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | 3.8 | MG:MAGNESIUM ION ZN:ZINC ION | |||
5gah | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abcd) | 3.8 | MG:MAGNESIUM ION ZN:ZINC ION | |||
5mmi | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde](abcd) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde](abcd) | 3.25 | MG:MAGNESIUM ION ZN:ZINC ION | |||
5o60 | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](abc) | 3.2 | MG:MAGNESIUM ION PHE:PHENYLALANINE ZN:ZINC ION | |||
5ool | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzAA](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzAA](ab) | [A2BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz](ab) | 3.06 | MG:MAGNESIUM ION PNS:4___sq___-PHOSPHOPANTETHEINE ZN:ZINC ION | |||
5oom | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz](ab) | [A2BCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxy](ab) | 3.03 | MG:MAGNESIUM ION PNS:4___sq___-PHOSPHOPANTETHEINE ZN:ZINC ION | |||
5zet | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | 3.2 | ||||
6dzp | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcde][a](ab) | 3.42 | ||||
6i0y | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abc) | [ABCDEFGHIJKLMNOPQRSTUVWXYZabcdef][a](abc) | 3.2 | MG:MAGNESIUM ION TRP:TRYPTOPHAN ZN:ZINC ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA